November 08, 2022

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Modeling Variations in Carbon Dioxide Generation in the Riverbed of the Columbia River Basin

A newly developed basin-scale river corridor model can quantify how riverbed microbes drive carbon dioxide respiration and generation in the Columbia River Basin.

A new river corridor model that accounts for carbon and nitrogen movement and transformation can quantify microbial respiration.

[Reprinted under a Creative Commons Attribution 4.0 International License (CC BY 4.0) from Son, K., et al. "Spatial Microbial Respiration Variations in the Hyporheic Zones Within the Columbia River Basin." Journal of Geophysical Research: Biogeosciences 127 (11), e2021JG006654 (2022). DOI:10.1029/2021JG006654.]

The Science

The hyporheic zone (HZ) at the bottom of rivers plays an important role in the overall river ecosystem, accounting for a significant portion of carbon dioxide (CO2) emissions into the water column. However, HZ respiration modeling studies lack quantification of how the HZ contributes to total CO2 at the scale of the entire watershed or basin. Previous studies have also incompletely considered the contribution of anaerobic respiration. A new modeling study developed an approach to couple carbon and nitrogen cycles in an entire river corridor to quantify microbially-driven aerobic and anaerobic respiration in the HZ. This new model allowed researchers to determine key factors controlling the spatial variability of microbially-driven respiration within the Columbia River Basin.

The Impact

Riverbed CO2 production accounts for a significant portion of the carbon cycle of inland waters. Previous regional and global studies that estimated stream and river CO2 release did not include the effect of CO2 production in riverbeds. The basin-scale coupled carbon-nitrogen model developed in this study allows researchers to quantify the spatial variation of aerobic and anaerobic respiration across the entire Columbia River Basin. This study offers an option for testing hypotheses related to microbially driven respiration processes in river systems in other biomes and climates and can be used as a tool to design sampling schemes for large-scale experimental studies.


Microbes in riverbeds generate high amounts of CO2, but numerical simulation models have not accurately quantified their contributions to total CO2 budgets across entire river basins and other large regions. In this study, a multi-institutional team of researchers used a numerical simulation model to estimate CO2 emissions from riverbeds into the water column in the presence and absence of oxygen. The researchers then identified important variables that explain the spatial variation of riverbed CO2 emissions within the Columbia River Basin. The study found that CO2 emissions from riverbeds showed high spatial variability. Within the Columbia River Basin, wetter sub-basins showed higher CO2 emissions than drier sub-basins. Medium-sized rivers generated the highest CO2 emissions. Most CO2 emissions from channels occurred in the presence of oxygen. However, reaches in agricultural areas generated relatively high CO2 emissions without oxygen. Finally, the team found that the water exchange rate between channels and riverbeds, as opposed to other physical variables, could explain the spatial variation of CO2 emissions.

Principal Investigator

Kyongho Son
Pacific Northwest National Laboratory
[email protected]

Program Manager

Paul Bayer
U.S. Department of Energy, Biological and Environmental Research (SC-33)
Environmental System Science
[email protected]


This research was supported by the Department of Energy’s (DOE) Office of Science (SC) Biological and Environmental Research (BER) Program, as part of BER’s Environmental System Science (ESS) program. This contribution originates from the River Corridor Science Focus Area (SFA) at Pacific Northwest National Laboratory. This research used resources from the National Energy Research Scientific Computing Center, a DOE SC User Facility.


Son, K., et al. "Spatial Microbial Respiration Variations in the Hyporheic Zones Within the Columbia River Basin." Journal of Geophysical Research: Biogeosciences 127 (11), e2021JG006654  (2022).