November 17, 2020

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Multi-year Incubation Experiments Boost Confidence in Model Projections of Long-term Soil Carbon Dynamics

Model simulations based on long-term incubations better predict long-term field warming compared to short-term incubations.

Modeled and observed soil organic carbon changes under warming. Modeled relative change (%) in soil organic carbon (SOC) based on a five-decade projection under 5°C warming using parameters obtained from calculations using dataset of short-term glucose (6 day, blue), cellulose less than 1 year (6, 30, 90, 180, 360 days, red) and cellulose equal to or more than 1.5 years (480 and 729 days, green). Field observations are based on the meta-analysis of field-warming experiments (all data, grey) and those over different experimental durations (e.g., <1 year, 1-10 years, and >10 years). In model results, boxplots show means (triangle), medians (line), 1st and 3rd quartiles (box, interquartile range or IQR), upper and lower extremes (whiskers). The whiskers were determined as equal to or less than 1.5 times IQR against 1st and 3rd quartiles, respectively. In model results, N= 16 independent runs in each box plot; In the meta-analysis, the number of observations is in parentheses.

[Reprinted under a Creative Commons Attribution 4.0 International License (CC BY 4.0) from Jian, S. et al. “Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics.” Nature Communications 11, 5864 (2020) DOI: 10.1038/s41467-020-19428-y]

The Science

As the climate warms, soil carbon decomposition by microbes may be accelerated to release more carbon dioxide, but most predictions are based on short-term laboratory incubations that might not reflect rates in situ. Here the authors optimize model projections with the Microbial-ENzyme Decomposition (MEND) model using parameters derived from short- and long-term incubations, and find that only the projections from long-term incubations match long-term field-scale observational changes in soil organic carbon.

The Impact

Model simulations based on long-term experiments predicted small gains in soil organic carbon, similar to observations from many long-term field warming experiments.


Predictions of long-term changes in soil organic carbon are needed to understand future climate, but most projections are derived from model simulations based on lab incubations of short durations, e.g., hours to days. Here, model projections were compared from incubation datasets ranging from days to years, from four paired forest and grassland sites, and using substrates glucose and cellulose. Model projections derived from short-term experiments predicted greater losses of soil carbon than projections derived from long-term experiments. The projections from the long-term incubations (> 1.5 y) were more similar to the results of a meta-analysis of warming experiments in the field, which predicted small gains in soil carbon over 1- to 10-year time frames. Mechanistically, the findings represent feedbacks in the microbial community, where warming initially releases more organic carbon substrate for decomposition, but later limits reproduction and growth of the microbial community causing small positive increases in soil organic carbon. These findings suggest that long-term incubation experiments are required to accurately model long-term behavior of soil organic carbon.

Principal Investigator

Melanie Mayes
Oak Ridge National Laboratory
[email protected]

Program Manager

Daniel Stover
U.S. Department of Energy, Biological and Environmental Research (SC-33)
Environmental System Science
[email protected]


This work is financially supported by the U.S. Department of Energy (DOE) Office of Biological and Environmental Research through the Terrestrial Ecosystem Science Scientific Focus Area at Oak Ridge National Laboratory (ORNL), the U.S. National Science Foundation (NSF) HBCU-EiR, and the DOE Genomic Science Program. Financial support from ORNL to Tennessee State University (TSU) was provided through a subcontract. ORNL is managed by the University of Tennessee-Battelle, LLC with the U.S. DOE.


Jian, S. et al. "Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics." Nature Communications 11 5864  (2020).